nf-core/deeptools/alignmentsieve @ 0.0.0-0c7146d
Summary
This tool filters alignments in a BAM/CRAM file according the the specified parameters.
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_ALIGNMENTSIEVE } from 'nf-core/deeptools/alignmentsieve'
License
MIT License
Process
Name
|
DEEPTOOLS_ALIGNMENTSIEVE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
BAM file *.{bam}
|
input_index
file
|
BAM index file *.{bai}
|
Output
4 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_as.bam
file
|
BAM file *.bam
|
#2
logs
*_log.txt
file
|
TXT file *.txt
|
|---|
#3
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
#4
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
alignmentSieve --version | sed "s/alignmentSieve //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | https://deeptools.readthedocs.io/en/develop/content/tools/alignmentSieve.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:35:22 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Falignmentsieve/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/alignmentsieve/blobs/sha256:c8407b596780b5ef74d3d1bcc8d545694215dca10ce3b15146d2749a4c712f28 |
| Size | 2.6 KB |
| Checksum | sha256:c8407b596780b5ef74d3d1bcc8d545694215dca10ce3b15146d2749a4c712f28 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:35:22 (UTC) | 1 | 2.6 KB | - |