nf-core/deacon/filter @ 0.0.0-0c7146d
Summary
Filter DNA sequences using index of reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { DEACON_FILTER } from 'nf-core/deacon/filter'
License
MIT License
Process
Name
|
DEACON_FILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
index
file
|
Deacon minimizer index file *.idx
|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. *.{fastq,fastq.gz,fqs,fqs.gz,fq,fq.gz}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.json
file
|
JSON file containing summary of results. *.json
|
#2
fastq_filtered
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}*.fq.gz
file
|
List of output filtered FastQ files of size 1 and 2, for single-end and paired-end data, respectively. *.fq.gz
|
#3
versions_deacon
tuple
${task.process}
string
|
The name of the process |
|---|---|
deacon
string
|
The name of the tool |
deacon --version | head -n1 | sed "s/deacon //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deacon | Fast alignment-free sequence filter | https://github.com/bede/deacon |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:34:27 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeacon%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deacon/filter/blobs/sha256:2b3451ce1c398466a42030059bf8a232e133d555af79c45c4fc930cfc38948cc |
| Size | 2.9 KB |
| Checksum | sha256:2b3451ce1c398466a42030059bf8a232e133d555af79c45c4fc930cfc38948cc |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:34:27 (UTC) | 1 | 2.9 KB | - |