nf-core/damageprofiler @ 0.0.0-0c7146d
Summary
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
Get started
Add the following snippet to your workflow script to include this module.
include { DAMAGEPROFILER } from 'nf-core/damageprofiler'
License
MIT License
Process
Name
|
DAMAGEPROFILER |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
fasta
file
|
OPTIONAL FASTA reference file *.{fasta,fna,fa}
|
|---|
fai
file
|
OPTIONAL FASTA index file from samtools faidx *.{fai}
|
|---|
specieslist
file
|
OPTIONAL text file with list of target reference headers *.{txt}
|
|---|
Output
2 channels
#1
results
tuple
meta
directory
|
DamageProfiler results directory */*
|
|---|---|
${prefix}
directory
|
DamageProfiler results directory */*
|
#2
versions_damageprofiler
tuple
${task.process}
string
|
The name of the process |
|---|---|
damageprofiler
string
|
The name of the tool |
damageprofiler -v | sed 's/^DamageProfiler v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| damageprofiler | A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage | https://github.com/Integrative-Transcriptomics/DamageProfiler |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:34:18 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdamageprofiler/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/damageprofiler/blobs/sha256:257bc6f407a08f264559a9f42bcfe038a1e9cf8ebcbdda497bbaa5ed3387d1de |
| Size | 3.5 KB |
| Checksum | sha256:257bc6f407a08f264559a9f42bcfe038a1e9cf8ebcbdda497bbaa5ed3387d1de |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:34:18 (UTC) | 1 | 3.5 KB | - |