Nextflow Registry | nf-core/cutesv@0.0.0-0c7146d

nf-core/cutesv @ 0.0.0-0c7146d

structural-variant calling with cutesv

cutesv structural-variant calling sv

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @christopher-hakkaart @yuukiiwa

Maintainers: @christopher-hakkaart @yuukiiwa

structural-variant calling with cutesv

Add the following snippet to your workflow script to include this module.

include { CUTESV } from 'nf-core/cutesv'

MIT License

Process

`Name`	`CUTESV`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`bam` file	BAM file `*.bam`
`bai` file	Index of BAM file `*.bai`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. [ id:'fasta' ]
`fasta` file	Reference database in FASTA format

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.vcf` file	VCF file containing called variants from CuteSV `*.vcf`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
cutesv	a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection.	https://github.com/tjiangHIT/cuteSV

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:34:16 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcutesv/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cutesv/blobs/sha256:19373337aba4d07fce0f8bbbf57dc2b4ee44494708c0c8a24039d7c747f4132e
Size	2.4 KB
Checksum	sha256:19373337aba4d07fce0f8bbbf57dc2b4ee44494708c0c8a24039d7c747f4132e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:34:16 (UTC)		1	2.4 KB	-