nf-core/custom/tabulartogseagct @ 0.0.0-0c7146d
Summary
Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_TABULARTOGSEAGCT } from 'nf-core/custom/tabulartogseagct'
License
MIT License
Process
Name
|
CUSTOM_TABULARTOGSEAGCT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing matrix information e.g. [ id:'test' ] |
|---|---|
tabular
file
|
Tabular (e.g. TSV or CSV file) containing a numeric matrix with features (e.g. genes) by row and samples by column. *.{tsv,csv}
|
Output
2 channels
#1
gct
tuple
meta
map
|
Groovy Map containing matrix information e.g. [ id:'test' ] |
|---|---|
*.gct
file
|
GCT format version of input TSV *.{gct}
|
#2
versions_mawk
tuple
${task.process}
string
|
The name of the process |
|---|---|
mawk
string
|
The name of the tool |
mawk --version | sed '1!d;s/mawk //;s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| tabulartogseagct | Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:34:11 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Ftabulartogseagct/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/tabulartogseagct/blobs/sha256:9040b0a9af7f3f7fa44f2c39fc69265217a426fab1d5a3a222d6c8e2c3a6e98d |
| Size | 2.6 KB |
| Checksum | sha256:9040b0a9af7f3f7fa44f2c39fc69265217a426fab1d5a3a222d6c8e2c3a6e98d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:34:11 (UTC) | 1 | 2.6 KB | - |