Nextflow Registry | nf-core/custom/tabulartogseachip@0.0.0-0c7146d

nf-core/custom/tabulartogseachip @ 0.0.0-0c7146d

Make a GSEA class file (.chip) from tabular inputs

gsea chip convert tabular

Latest version: 0.0.0-e3e0c68

Total downloads: 2

Source: nf-core/modules

Authors: @pinin4fjords @suzannejin

Maintainers: @pinin4fjords

Make a GSEA class file (.chip) from tabular inputs

Add the following snippet to your workflow script to include this module.

include { CUSTOM_TABULARTOGSEACHIP } from 'nf-core/custom/tabulartogseachip'

MIT License

Process

`Name`	`CUSTOM_TABULARTOGSEACHIP`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing data information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`tabular` file	Tabular (NOTE that for the moment it only works for TSV file) containing a column with the features ids, and another column with the features symbols. `*.{tsv}`

#2 tuple

`id` string	The name of the column containing feature ids
`symbol` string	The name of the column containing feature symbols

Output 2 channels

#1 chip tuple

`meta` map	Groovy Map containing metadata e.g. [ id:'test', ... ]
`*.chip` file	A categorical class format file (.chip) as defined by the Broad documentation at https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats `*.chip`

#2 versions_gawk tuple

`${task.process}` string	The name of the process
`gawk` string	The name of the tool
`gawk --version 2>&1 \| sed '1!d;s/^.GNU Awk //; s/, .//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
custom	Make a GSEA annotation file (.chip) from tabular inputs	n/a

Version	0.0.0-0c7146d
Commit ID	e3e0c687eb5c129c011fca992af762ff2d4cb0f3
Release Date	08 Apr 2026 18:34:06 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Ftabulartogseachip/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/tabulartogseachip/blobs/sha256:f6959e0a0e7832d3b8fae4525d3341bb9cf6722a05e7aa1e39e28d56c632d2a1
Size	2.6 KB
Checksum	sha256:f6959e0a0e7832d3b8fae4525d3341bb9cf6722a05e7aa1e39e28d56c632d2a1
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-e3e0c68	27 Apr 2026 21:15:28 (UTC)		1	2.7 KB	↔
0.0.0-0c7146d	08 Apr 2026 18:34:06 (UTC)		1	2.6 KB	-