Nextflow Registry | nf-core/custom/multiqccustombiotype@0.0.0-76f0d65

nf-core/custom/multiqccustombiotype @ 0.0.0-76f0d65

Generate MultiQC-compatible biotype count summaries from featureCounts output

biotype featurecounts multiqc rnaseq qc

Latest version: 0.0.0-76f0d65

Total downloads: 1

Source: nf-core/modules

Authors: @pinin4fjords

Maintainers: @pinin4fjords

Generate MultiQC-compatible biotype count summaries from featureCounts output

Add the following snippet to your workflow script to include this module.

include { CUSTOM_MULTIQCCUSTOMBIOTYPE } from 'nf-core/custom/multiqccustombiotype'

MIT License

Process

`Name`	`CUSTOM_MULTIQCCUSTOMBIOTYPE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`count` file	featureCounts output count file `*.featureCounts.txt`

#2 tuple

`meta2` map	Groovy Map containing reference information
`header` file	Header file for the biotype counts MultiQC table `*.txt`

Output 3 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information
`*biotype_counts_mqc.tsv` file	Biotype counts formatted for MultiQC. The process fails if the number of biotype rows exceeds the threshold passed via `ext.args = '--max_biotypes N'` (default 100), since MultiQC cannot render a bar plot with that many categories. `*biotype_counts_mqc.tsv`

#2 rrna tuple

`meta` map	Groovy Map containing sample information
`*biotype_counts_rrna_mqc.tsv` file	rRNA percentage for MultiQC general stats `*biotype_counts_rrna_mqc.tsv`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
custom	Summarise featureCounts biotype assignments for MultiQC reporting	n/a

Version	0.0.0-76f0d65
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	13 Apr 2026 21:15:19 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fmultiqccustombiotype/0.0.0-76f0d65/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/multiqccustombiotype/blobs/sha256:11cff2f6d2719046af40614976d9b0a37cc1fe6a3826dc9f4a7abb0938a61a1d
Size	3.9 KB
Checksum	sha256:11cff2f6d2719046af40614976d9b0a37cc1fe6a3826dc9f4a7abb0938a61a1d
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-76f0d65	13 Apr 2026 21:15:19 (UTC)		1	3.9 KB	-