nf-core/custom/addmostseverepli @ 0.0.0-0c7146d
Summary
Annotate a VEP annotated VCF with the most severe pLi field
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_ADDMOSTSEVEREPLI } from 'nf-core/custom/addmostseverepli'
License
MIT License
Process
Name
|
CUSTOM_ADDMOSTSEVEREPLI |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
VEP annotated VCF file *.{vcf,vcf.gz}
|
Output
3 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcf.gz
file
|
Annotated VCF file *.vcf.gz
|
#2
versions_bgzip
tuple
${task.process}
string
|
The name of the process |
|---|---|
bgzip
string
|
The name of the tool |
bgzip --version | sed '1!d;s/.* //'
eval
|
The expression to obtain the version of the tool |
#3
versions_addmostseverepli
tuple
${task.process}
string
|
The name of the process |
|---|---|
addmostseverepli
string
|
The name of the tool |
1.2.0
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| custom | Custom module to annotate a VEP annotated VCF with the most severe pLi field | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:33:46 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Faddmostseverepli/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/custom/addmostseverepli/blobs/sha256:d03bf54e027e960bdfcbedd90e8f27ca6a6081f5b7118a22e14f503458766170 |
| Size | 4.0 KB |
| Checksum | sha256:d03bf54e027e960bdfcbedd90e8f27ca6a6081f5b7118a22e14f503458766170 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:33:46 (UTC) | 1 | 4.0 KB | - |