Nextflow Registry | nf-core/ctatsplicing/prepgenomelib@0.0.0-0c7146d

nf-core/ctatsplicing/prepgenomelib @ 0.0.0-0c7146d

Reference preparation for CTAT-splicing

splicing cancer rna rnaseq

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @anoronh4 @nvnieuwk

Maintainers: @anoronh4

Reference preparation for CTAT-splicing

Add the following snippet to your workflow script to include this module.

include { CTATSPLICING_PREPGENOMELIB } from 'nf-core/ctatsplicing/prepgenomelib'

MIT License

Process

`Name`	`CTATSPLICING_PREPGENOMELIB`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`genome_lib` file	CTAT genome library reference `*`

`cancer_intron_tsv` file	CTAT-splicing data resource supplement

Output 2 channels

#1 reference tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`genome_lib` file	Modified CTAT genome library reference `*`

#2 versions_ctatsplicing tuple

`${task.process}` string	The name of the process
`ctatsplicing` string	The name of the tool
`0.0.3` string	The expression to obtain the version of the tool

Tool	Description	Homepage
ctatsplicing	Detection and annotation of cancer splicing aberrations	https://github.com/TrinityCTAT/CTAT-SPLICING

Version	0.0.0-0c7146d
Commit ID	4e8e48c04e24c2159a5589a36bae0f038809cd48
Release Date	08 Apr 2026 18:33:38 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fctatsplicing%2Fprepgenomelib/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ctatsplicing/prepgenomelib/blobs/sha256:26fa10cf190072c9fc6cafda6c524a9e2e51fa70e0a15b9a673b4e669f726064
Size	5.1 KB
Checksum	sha256:26fa10cf190072c9fc6cafda6c524a9e2e51fa70e0a15b9a673b4e669f726064
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:33:38 (UTC)		1	5.1 KB	-