Nextflow Registry | nf-core/coptr/map@0.0.0-0c7146d

nf-core/coptr/map @ 0.0.0-0c7146d

Maps the reads to the reference database

coptr mapping ptr

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @ramirobarrantes

Maintainers: @ramirobarrantes

Maps the reads to the reference database

Add the following snippet to your workflow script to include this module.

include { COPTR_MAP } from 'nf-core/coptr/map'

MIT License

Process

`Name`	`COPTR_MAP`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fasta` file	fastq file with reads `*.{.fastq,.fq,.fastq.gz,fq.gz}`

#2 tuple

`meta2` map	Groovy Map containing index genome id and path e.g. [ id:'test', 'bowtie2' ]
`index` file	Directory with Bowtie2 genome index files `*.ebwt`

Output 2 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.bam` file	Alignment (BAM) file of reads mapped to the reference database `*.{bam}`

#2 versions_coptr tuple

`${task.process}` string	The name of the process
`coptr` string	The name of the tool
`coptr \|& sed -E '11!d ; s/CoPTR.?$v(.?)$.*/\1/'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
coptr	Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.	https://github.com/tyjo/coptr

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:33:03 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcoptr%2Fmap/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/coptr/map/blobs/sha256:a6b8994368f9baf6480fae56a8d93a77b64f2eeb93f95ffe5efe28dfddf9b070
Size	3.3 KB
Checksum	sha256:a6b8994368f9baf6480fae56a8d93a77b64f2eeb93f95ffe5efe28dfddf9b070
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:33:03 (UTC)		1	3.3 KB	-