nf-core/cooltools/insulation @ 0.0.0-0c7146d
Summary
Calculate the diamond insulation scores and call insulating boundaries
Get started
Add the following snippet to your workflow script to include this module.
include { COOLTOOLS_INSULATION } from 'nf-core/cooltools/insulation'
License
MIT License
Process
Name
|
COOLTOOLS_INSULATION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
cool
file
|
cool file *.cool
|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
*tsv
file
|
tsv file with insulation score and boundaries for several window sizes |
#2
bigwig
tuple
meta
map
|
Groovy Map containing sample information e.g. id:'test' |
|---|---|
*.bw
file
|
bigwig file for different window sizes |
#3
versions_cooltools
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooltools
string
|
The name of the tool |
cooltools --version | sed -n 's/cooltools, version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooltools | Analysis tools for genomic interaction data stored in .cool format | https://cooltools.readthedocs.io |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:55 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcooltools%2Finsulation/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cooltools/insulation/blobs/sha256:81cb3bb1c6a13b80d4635f6be372932765dec82c5f7242aaf65dbfc2b18d6b85 |
| Size | 2.2 KB |
| Checksum | sha256:81cb3bb1c6a13b80d4635f6be372932765dec82c5f7242aaf65dbfc2b18d6b85 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:55 (UTC) | 1 | 2.2 KB | - |