nf-core/cooler/makebins @ 0.0.0-0c7146d
Summary
Generate fixed-width genomic bins
Get started
Add the following snippet to your workflow script to include this module.
include { COOLER_MAKEBINS } from 'nf-core/cooler/makebins'
License
MIT License
Process
Name
|
COOLER_MAKEBINS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
chromsizes
file
|
Path to a chromsizes file. |
cool_bin
integer
|
Resolution (bin size) in base pairs |
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.bed
file
|
Genome segmentation at a fixed resolution as a BED file. *.bed
|
#2
versions_cooler
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooler
string
|
The name of the tool |
cooler --version 2>&1 | sed "s/cooler, version //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooler | Sparse binary format for genomic interaction matrices | https://open2c.github.io/cooler/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:48 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcooler%2Fmakebins/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cooler/makebins/blobs/sha256:fb3f99da29e9c1702a57151c87764db12f4b2ee1e8f35e0ada29c18b424f8f2b |
| Size | 2.2 KB |
| Checksum | sha256:fb3f99da29e9c1702a57151c87764db12f4b2ee1e8f35e0ada29c18b424f8f2b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:48 (UTC) | 1 | 2.2 KB | - |