nf-core/cooler/cload @ 0.0.0-0c7146d
Summary
Create a cooler from genomic pairs and bins
Get started
Add the following snippet to your workflow script to include this module.
include { COOLER_CLOAD } from 'nf-core/cooler/cload'
License
MIT License
Process
Name
|
COOLER_CLOAD |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
contacts
file
|
Path to contacts (e.g. read pairs, pairix, tabix) file. |
index
file
|
Path to index file of the contacts. |
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
chromsizes
file
|
Path to a chromsizes file. |
mode
integer
|
Input mode for cooler cload - one of pairs, pairix, tabix |
|---|
cool_bin
integer
|
Bins size in bp |
|---|
Output
2 channels
#1
cool
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.cool
file
|
Output COOL file path *.cool
|
#2
versions_cooler
tuple
${task.process}
string
|
The name of the process |
|---|---|
cooler
string
|
The name of the tool |
cooler --version 2>&1 | sed "s/cooler, version //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cooler | Sparse binary format for genomic interaction matrices | https://open2c.github.io/cooler/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:42 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcooler%2Fcload/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cooler/cload/blobs/sha256:38fc11a6a4e29b64148e45a345aab0b8dfe7a60fa8f4648ad129f6c7eed4d917 |
| Size | 2.8 KB |
| Checksum | sha256:38fc11a6a4e29b64148e45a345aab0b8dfe7a60fa8f4648ad129f6c7eed4d917 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:42 (UTC) | 1 | 2.8 KB | - |