nf-core/concoct/mergecutupclustering @ 0.0.0-0c7146d
Summary
Merge consecutive parts of the original contigs original cut up by cut_up_fasta.py
Get started
Add the following snippet to your workflow script to include this module.
include { CONCOCT_MERGECUTUPCLUSTERING } from 'nf-core/concoct/mergecutupclustering'
License
MIT License
Process
Name
|
CONCOCT_MERGECUTUPCLUSTERING |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
clustering_csv
file
|
Input cutup clustering result. Typically *_gt1000.csv from concoct *.csv
|
Output
2 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csv
file
|
Cluster assignments per contig part with consensus cluster *.csv
|
#2
versions_concoct
tuple
${task.process}
string
|
The name of the process |
|---|---|
concoct
string
|
The name of the tool |
concoct --version | cut -d " " -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| concoct | Clustering cONtigs with COverage and ComposiTion | https://concoct.readthedocs.io/en/latest/index.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:32:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fconcoct%2Fmergecutupclustering/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/concoct/mergecutupclustering/blobs/sha256:45874c56c8c77ee46721e9c54595c29c4de7db0a375f99dddb63b775362ed2d6 |
| Size | 2.7 KB |
| Checksum | sha256:45874c56c8c77ee46721e9c54595c29c4de7db0a375f99dddb63b775362ed2d6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:32:25 (UTC) | 1 | 2.7 KB | - |