Nextflow Registry | nf-core/cnvpytor/view@0.0.0-0c7146d

nf-core/cnvpytor/view @ 0.0.0-0c7146d

view function to generate vcfs

cnv calling vcf

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sima-r @ramprasadn

Maintainers: @sima-r @ramprasadn

view function to generate vcfs

Add the following snippet to your workflow script to include this module.

include { CNVPYTOR_VIEW } from 'nf-core/cnvpytor/view'

MIT License

Process

`Name`	`CNVPYTOR_VIEW`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`pytor_files` file	pytor file containing cnv calls. To merge calls from multiple samples use a list of files. `*.{pytor}`

`bin_sizes` string	list of binsizes separated by space e.g. "1000 10000" and "1000"

`output_format` string	output format of the cnv calls. Valid entries are "tsv", "vcf", and "xls"

Output 4 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.tsv` file	tsv file containing cnv calls `*.{tsv}`

#2 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.vcf` file	vcf file containing cnv calls `*.{vcf}`

#3 xls tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.xls` file	xls file containing cnv calls `*.{xls}`

#4 versions_cnvpytor tuple

`${task.process}` string	The name of the process
`cnvpytor` string	The name of the tool
`1.3.2` string	The expression to obtain the version of the tool

Tool	Description	Homepage
cnvpytor	calling CNVs using read depth	https://github.com/abyzovlab/CNVpytor

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:32:05 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fview/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cnvpytor/view/blobs/sha256:e3f23e3555940950eab467f44a4ca100fd391ad5ab108f8a6d0404f73ca5e432
Size	3.0 KB
Checksum	sha256:e3f23e3555940950eab467f44a4ca100fd391ad5ab108f8a6d0404f73ca5e432
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:32:05 (UTC)		1	3.0 KB	-