nf-core/cnvpytor/histogram @ 0.0.0-0c7146d
Summary
calculates read depth histograms
Get started
Add the following snippet to your workflow script to include this module.
include { CNVPYTOR_HISTOGRAM } from 'nf-core/cnvpytor/histogram'
License
MIT License
Process
Name
|
CNVPYTOR_HISTOGRAM |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
pytor
file
|
pytor file containing read depth data *.{pytor}
|
bin_sizes
string
|
list of binsizes separated by space e.g. "1000 10000" and "1000" |
|---|
Output
2 channels
#1
pytor
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${pytor.baseName}.pytor
file
|
pytor file containing read depth histograms binned based on given bin size(s) *.{pytor}
|
#2
versions_cnvpytor
tuple
${task.process}
string
|
The name of the process |
|---|---|
cnvpytor
string
|
The name of the tool |
1.3.2
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvpytor | calling CNVs using read depth | https://github.com/abyzovlab/CNVpytor |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:31:59 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fhistogram/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cnvpytor/histogram/blobs/sha256:78e36aeccfe79c00bd279dc4319b6edc8d801dc29d8585915c2f14b8528489ed |
| Size | 2.4 KB |
| Checksum | sha256:78e36aeccfe79c00bd279dc4319b6edc8d801dc29d8585915c2f14b8528489ed |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:31:59 (UTC) | 1 | 2.4 KB | - |