Nextflow Registry | nf-core/cnvpytor/callcnvs@0.0.0-0c7146d

nf-core/cnvpytor/callcnvs @ 0.0.0-0c7146d

Command line tool for calling CNVs in whole genome sequencing data

CNV call wgs

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sima-r

Maintainers: @sima-r

Command line tool for calling CNVs in whole genome sequencing data

Add the following snippet to your workflow script to include this module.

include { CNVPYTOR_CALLCNVS } from 'nf-core/cnvpytor/callcnvs'

MIT License

Process

`Name`	`CNVPYTOR_CALLCNVS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`pytor` file	pytor file containing partitions of read depth histograms using mean-shift method `*.{pytor}`

`bin_sizes` string	list of binsizes separated by space e.g. "1000 10000" and "1000"

Output 2 channels

#1 pytor tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`${pytor.baseName}.pytor` file	pytor files containing cnv calls `*.{pytor}`

#2 versions_cnvpytor tuple

`${task.process}` string	The name of the process
`cnvpytor` string	The name of the tool
`cnvpytor --version \| sed -n 's/.CNVpytor $.$/\1/p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
cnvpytor	calling CNVs using read depth	https://github.com/abyzovlab/CNVpytor

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:31:57 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fcallcnvs/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cnvpytor/callcnvs/blobs/sha256:2838e3dcaf1bb369664aac01234ae6e4547d7efd6e51d91c605b4bf9180335b4
Size	2.2 KB
Checksum	sha256:2838e3dcaf1bb369664aac01234ae6e4547d7efd6e51d91c605b4bf9180335b4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:31:57 (UTC)		1	2.2 KB	-