nf-core/clippy @ 0.0.0-0c7146d
Summary
Runs the Clippy CLIP peak caller
Get started
Add the following snippet to your workflow script to include this module.
include { CLIPPY } from 'nf-core/clippy'
License
MIT License
Process
Name
|
CLIPPY |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks *.{bed,bed.gz}
|
gtf
file
|
A GTF file of genes to call peaks on *.{gtf}
|
|---|
fai
file
|
FAI file corresponding to the reference sequence *.{fai}
|
|---|
Output
4 channels
#1
peaks
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_Peaks.bed
file
|
BED file of peaks called by Clippy *_broadPeaks.bed.gz
|
#2
summits
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_Summits.bed
file
|
BED file of peak summits called by Clippy *[0-9].bed.gz
|
#3
intergenic_gtf
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*_intergenic_regions.gtf
file
|
GTF file of intergenic regions *_intergenic_regions.gtf
|
#4
versions_clippy
tuple
${task.process}
string
|
The name of the process |
|---|---|
clippy
string
|
The name of the tool |
clippy -v
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| clippy | An intuitive and interactive peak caller for CLIP data | https://github.com/ulelab/clippy |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:57 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fclippy/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/clippy/blobs/sha256:aa96505457a83ea5f11782b0989400c25bbed9805df9ab30185b38e8f14d9654 |
| Size | 2.6 KB |
| Checksum | sha256:aa96505457a83ea5f11782b0989400c25bbed9805df9ab30185b38e8f14d9654 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:57 (UTC) | 1 | 2.6 KB | - |