nf-core/circexplorer2/parse @ 0.0.0-0c7146d
Summary
CIRCexplorer2 parses fusion junction files from multiple aligners to prepare them for CIRCexplorer2 annotate.
Get started
Add the following snippet to your workflow script to include this module.
include { CIRCEXPLORER2_PARSE } from 'nf-core/circexplorer2/parse'
License
MIT License
Process
Name
|
CIRCEXPLORER2_PARSE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fusions
file
|
BAM (BWA), BED (Segemehl), TXT (MapSplice), or Junction (STAR) file. Aligner will be autodetected based on file suffix. *.{bam,junction,bed,txt}
|
Output
2 channels
#1
junction
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
BED file *.bed
|
#2
versions_circexplorer2
tuple
${task.process}
string
|
The name of the process |
|---|---|
circexplorer2
string
|
The name of the tool |
CIRCexplorer2 --version 2>&1; true
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| circexplorer2 | Circular RNA analysis toolkit | https://github.com/YangLab/CIRCexplorer2/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcircexplorer2%2Fparse/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/circexplorer2/parse/blobs/sha256:6a0e7580c734951f0a5a016de5492d0d03994074c6ca6713643b7df482b1186d |
| Size | 2.4 KB |
| Checksum | sha256:6a0e7580c734951f0a5a016de5492d0d03994074c6ca6713643b7df482b1186d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:47 (UTC) | 1 | 2.4 KB | - |