Nextflow Registry | nf-core/chromograph@0.0.0-0c7146d

nf-core/chromograph @ 0.0.0-0c7146d

Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.

chromosome_visualization bed wig png

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @ramprasadn

Maintainers: @ramprasadn

Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.

Add the following snippet to your workflow script to include this module.

include { CHROMOGRAPH } from 'nf-core/chromograph'

MIT License

Process

`Name`	`CHROMOGRAPH`

Input 7 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`autozyg` file	Bed file containing the regions of autozygosity

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`coverage` file	Wig file containing the coverage information

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`exome` file	Bed file containing the coverage for exome.

#4 tuple

`meta4` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fracsnp` file	Wig file containing the fraction of homozygous SNPs

#5 tuple

`meta5` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`ideogram` file	Bed file containing information necessary for ideogram plots. Format ['chrom', 'start', 'end', 'name', 'gStain']

#6 tuple

`meta6` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`regions` file	Bed file containing UPD regions

#7 tuple

`meta7` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`sites` file	Bed file containing UPD sites

Output 2 channels

#1 plots tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.png` file	Plot(s) in PNG format

#2 versions_chromograph tuple

`${task.process}` string	The process the versions were collected from
`chromograph` string	The tool name
`chromograph --version \| sed 's/.* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
chromograph	Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.	https://github.com/Clinical-Genomics/chromograph

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:30:43 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fchromograph/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/chromograph/blobs/sha256:6d093d3585b3ae41d6f48b60dcefe2f16bf90399abda68503d000eb3fa898db7
Size	3.7 KB
Checksum	sha256:6d093d3585b3ae41d6f48b60dcefe2f16bf90399abda68503d000eb3fa898db7