nf-core/chromap/index @ 0.0.0-0c7146d
Summary
Indexes a fasta reference genome ready for chromatin profiling.
Get started
Add the following snippet to your workflow script to include this module.
include { CHROMAP_INDEX } from 'nf-core/chromap/index'
License
MIT License
Process
Name
|
CHROMAP_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Reference genome FASTA file *.{fa,fasta,fna}
|
fai
file
|
Reference genome FASTA index file *.{fai}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
*.index
file
|
Index file of the reference genome *.{index}
|
#2
versions_chromap
tuple
${task.process}
string
|
The name of the process |
|---|---|
chromap
string
|
The name of the tool |
chromap --version 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| chromap | Fast alignment and preprocessing of chromatin profiles | https://github.com/haowenz/chromap |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:30:41 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fchromap%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/chromap/index/blobs/sha256:5c980bcc6c098081e5a6307ac96a4f5602797ca1e0b200be9e853c4092e441f2 |
| Size | 2.2 KB |
| Checksum | sha256:5c980bcc6c098081e5a6307ac96a4f5602797ca1e0b200be9e853c4092e441f2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:30:41 (UTC) | 1 | 2.2 KB | - |