Nextflow Registry | nf-core/chewbbaca/createschema@0.0.0-0c7146d

nf-core/chewbbaca/createschema @ 0.0.0-0c7146d

Create a schema to determine the allelic profiles of a genome

cgMLST WGS genomics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @anwarMZ

Create a schema to determine the allelic profiles of a genome

Add the following snippet to your workflow script to include this module.

include { CHEWBBACA_CREATESCHEMA } from 'nf-core/chewbbaca/createschema'

MIT License

Process

`Name`	`CHEWBBACA_CREATESCHEMA`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`fasta` directory	One or multiple FASTA files to create schema from `*.{fasta,fa,fas,fna,fasta.gz,fa.gz,fas.gz,fna.gz}`

`prodigal_tf` file	File containing the prodigal training file `*.ptf`

`cds` file	File containing the prodigal cds file `*.cds`

Output 4 channels

#1 schema tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`results/$meta.id` directory	Schema directory `*/`

#2 invalid_cds

`results/invalid_cds.txt` file	File containing the list of alleles predicted by Prodigal that were excluded `*_invalid_cds.txt`

#3 cds_coordinates

`results/cds_coordinates.tsv` file	File containing the coordinates of the CDS in the input sample `*_cds_coordinates.tsv`

#4 versions_chewbbaca tuple

`${task.process}` string	The name of the process
`chewbbaca` string	The name of the tool
`chewie --version 2>&1 \| sed 's/chewBBACA version: //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
chewbbaca	A complete suite for gene-by-gene schema creation and strain identification.	https://chewbbaca.readthedocs.io/en/latest/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:30:35 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fchewbbaca%2Fcreateschema/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/chewbbaca/createschema/blobs/sha256:b588cb9bf0c6a151fde8839422372a95bedaaead0816b46bcc7497399710a2a5
Size	3.1 KB
Checksum	sha256:b588cb9bf0c6a151fde8839422372a95bedaaead0816b46bcc7497399710a2a5
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:30:35 (UTC)		1	3.1 KB	-