Nextflow Registry | nf-core/centrifuger/build@0.0.0-0c7146d

nf-core/centrifuger/build @ 0.0.0-0c7146d

Build centrifuger database for taxonomic profiling

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @haris18s

Maintainers: @haris18s

Build centrifuger database for taxonomic profiling

Add the following snippet to your workflow script to include this module.

include { CENTRIFUGER_BUILD } from 'nf-core/centrifuger/build'

MIT License

Process

`Name`	`CENTRIFUGER_BUILD`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information. e.g. `[id:'test', single_end:false ]`
`references` file	One or more reference genome sequence files in FASTA format. These are staged into the work directory and used to generate.a renference list file (used with -l option).

`taxonomy_nodes` file	File describing parent-child relationships of a taxonomic tree in NCBI nodes.dmp format

`taxonomy_names` file	File describing individual members of a taxonomic tree in NCBI names.dmp format

`conversion_table` file	Required: a tab-seperated file, mapping sequence IDs to taxonomy IDs.

Output 2 channels

#1 db tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}` directory	Centrifuger database index files `${prefix}`

#2 versions_centrifuger tuple

`${task.process}` string	The name of the process
`centrifuger` string	The name of the tool
`centrifuger -v 2>&1 \| sed 's/Centrifuger v//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
centrifuger	Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.	https://github.com/mourisl/centrifuger

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:30:17 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcentrifuger%2Fbuild/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/centrifuger/build/blobs/sha256:f3b1fc8154ffa9c9bb0049cf44f53f98ded14ad9502a2816099e36f3cecdcf0a
Size	2.7 KB
Checksum	sha256:f3b1fc8154ffa9c9bb0049cf44f53f98ded14ad9502a2816099e36f3cecdcf0a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:30:17 (UTC)		1	2.7 KB	-