Nextflow Registry | nf-core/centrifuge/build@0.0.0-0c7146d

nf-core/centrifuge/build @ 0.0.0-0c7146d

Build centrifuge database for taxonomic profiling

database metagenomics build db fasta

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sarah-buddle @jfy133

Build centrifuge database for taxonomic profiling

Add the following snippet to your workflow script to include this module.

include { CENTRIFUGE_BUILD } from 'nf-core/centrifuge/build'

MIT License

Process

`Name`	`CENTRIFUGE_BUILD`

Input 5 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Fasta file containing sequences to be used in centrifuge database. `*.{fasta,fna}`

`conversion_table` file	A tab-separated file with sequence ID to taxonomy ID mapping `*.{map}`

`taxonomy_tree` file	A \t\|\t-separated file mapping taxonomy. Typically nodes.dmp from the NCBI taxonomy dump. Links taxonomy IDs to their parents `*.{dmp}`

`name_table` file	A '\|'-separated file mapping taxonomy IDs to a name. Typically names.dmp from the NCBI taxonomy dump. Links taxonomy IDs to their scientific name `*.{dmp}`

`size_table` file	Optional list of taxonomic IDs and lengths of the sequences belonging to the same taxonomic IDs. `*`

Output 2 channels

#1 cf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `${prefix}/`
`${prefix}/` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `${prefix}/`

#2 versions_centrifuge tuple

`${task.process}` string	The name of the process
`centrifuge` string	The name of the tool
`centrifuge --version 2>&1 \| sed '1!d;s/.* version //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
centrifuge	Classifier for metagenomic sequences	https://ccb.jhu.edu/software/centrifuge/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:30:12 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcentrifuge%2Fbuild/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/centrifuge/build/blobs/sha256:2a86194f83222c3a55b7687bb4e57225e7b11f320517a7b1311206f76794e528
Size	2.6 KB
Checksum	sha256:2a86194f83222c3a55b7687bb4e57225e7b11f320517a7b1311206f76794e528
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:30:12 (UTC)		1	2.6 KB	-