nf-core/cellrangerarc/mkgtf @ 0.0.0-0c7146d
Summary
Module to build a filtered gtf needed by the 10x Genomics Cell Ranger Arc tool. Uses the cellranger-arc mkgtf command.
Get started
Add the following snippet to your workflow script to include this module.
include { CELLRANGERARC_MKGTF } from 'nf-core/cellrangerarc/mkgtf'
License
MIT License
Process
Name
|
CELLRANGERARC_MKGTF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gtf
file
|
The reference GTF transcriptome file *.gtf
|
Output
2 channels
#1
gtf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.gtf
directory
|
The filtered GTF transcriptome file ${prefix}.gtf
|
#2
versions_cellrangerarc
tuple
${task.process}
string
|
The name of the process |
|---|---|
cellrangerarc
string
|
The name of the tool |
cellranger-arc --version 2>&1 | sed 's/cellranger-arc cellranger-arc-//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cellrangerarc | Cell Ranger Arc by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more. | https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 4e8e48c04e24c2159a5589a36bae0f038809cd48 |
| Release Date | 08 Apr 2026 18:29:59 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcellrangerarc%2Fmkgtf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cellrangerarc/mkgtf/blobs/sha256:252f5ac959b70d76e8c16cca4190d45c21fec440e127ea518f27144bb262887f |
| Size | 2.3 KB |
| Checksum | sha256:252f5ac959b70d76e8c16cca4190d45c21fec440e127ea518f27144bb262887f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:29:59 (UTC) | 1 | 2.3 KB | - |