Nextflow Registry | nf-core/catpack/prepare@0.0.0-0c7146d

nf-core/catpack/prepare @ 0.0.0-0c7146d

Creates a CAT_pack database based on input FASTAs

catpack cat prepare database profiling build

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Creates a CAT_pack database based on input FASTAs

Add the following snippet to your workflow script to include this module.

include { CATPACK_PREPARE } from 'nf-core/catpack/prepare'

MIT License

Process

`Name`	`CATPACK_PREPARE`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`db_fasta` file	A FASTA file containing all sequences to be included in the database `*.{fasta,fa,fna}`

`names` file	An NCBI taxonomy-style names text file `*`

`nodes` file	An NCBI taxonomy-style nodes text file `*`

`acc2tax` file	An NCBI taxonomy names accession to taxonomy file `*`

Output 3 channels

#1 db tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`${prefix}/db/` directory	Directory containing CAT database files `${db}/`

#2 taxonomy tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`${prefix}/tax/` directory	Directory containing CAT prepared taxonomy database files `${db}/`

#3 versions_catpack tuple

`${task.process}` string	The process the versions were collected from
`catpack` string	The tool name
`CAT_pack --version \| sed 's/CAT_pack pack v//g;s/ .*//g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
catpack	CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)	https://github.com/MGXlab/CAT_pack

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:29:23 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcatpack%2Fprepare/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/catpack/prepare/blobs/sha256:157bf9eec46e46467aba8926f2e9d9b84580e12f164234e7e623d88cfd1e26d5
Size	3.0 KB
Checksum	sha256:157bf9eec46e46467aba8926f2e9d9b84580e12f164234e7e623d88cfd1e26d5
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:29:23 (UTC)		1	3.0 KB	-