nf-core/cat/fastq @ 0.0.0-0c7146d
Summary
Concatenates fastq files. Supports both compressed (.gz) and uncompressed inputs; uncompressed files are automatically gzip-compressed during concatenation.
Get started
Add the following snippet to your workflow script to include this module.
include { CAT_FASTQ } from 'nf-core/cat/fastq'
License
MIT License
Process
Name
|
CAT_FASTQ |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files to be concatenated. Accepts both gzip-compressed (.fastq.gz) and uncompressed (.fastq) files. |
Output
2 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.merged.fastq.gz
file
|
Merged fastq file *.{merged.fastq.gz}
|
#2
versions_cat
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
cat
string
|
The tool name |
cat --version 2>&1 | head -n 1 | sed 's/^.*coreutils) //; s/ .*\$//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cat | The cat utility reads files sequentially, writing them to the standard output. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:29:13 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcat%2Ffastq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/cat/fastq/blobs/sha256:bd1420b3d98280054697e4db11af6019b79152740eb97d2ee78a05914e3cfc75 |
| Size | 3.7 KB |
| Checksum | sha256:bd1420b3d98280054697e4db11af6019b79152740eb97d2ee78a05914e3cfc75 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:29:13 (UTC) | 1 | 3.7 KB | - |