nf-core/calder2 @ 0.0.0-0c7146d
Summary
Hierarchical Hi-C compartment computation
Get started
Add the following snippet to your workflow script to include this module.
include { CALDER2 } from 'nf-core/calder2'
License
MIT License
Process
Name
|
CALDER2 |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information. E.g. [ id:'test', single_end:false ] |
|---|---|
cool
file
|
Path to COOL file *.{cool.mcool}
|
resolution
integer
|
In case a .mcool file is provided, which resolution level to use for the analysis |
|---|
Output
3 channels
#1
output_folder
tuple
meta
map
|
Groovy Map containing sample information. E.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/
directory
|
Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed) |
#2
versions_calder
tuple
${task.process}
string
|
The name of the process |
|---|---|
calder
string
|
The name of the tool |
0.7
string
|
The expression to obtain the version of the tool |
#3
intermediate_data_folder
tuple
meta
map
|
Groovy Map containing sample information. E.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/intermediate_data/
directory
|
Output folder containing intermediate data produced during the computation |
| Tool | Description | Homepage |
|---|---|---|
| calder2 | Hierarchical Hi-C compartment computation | https://github.com/CSOgroup/CALDER2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:29:08 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcalder2/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/calder2/blobs/sha256:8dcc00f97c97e8b7ba850be395ec173af8c58406a13b0fdf6548be15450d48ee |
| Size | 3.2 KB |
| Checksum | sha256:8dcc00f97c97e8b7ba850be395ec173af8c58406a13b0fdf6548be15450d48ee |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:29:08 (UTC) | 1 | 3.2 KB | - |