Nextflow Registry | nf-core/caalm/downloadmodels@0.0.0-0c7146d

nf-core/caalm/downloadmodels @ 0.0.0-0c7146d

Downloads the CAALM model weights from HuggingFace Hub (lczong/CAALM) into a local models/ directory. The downloaded directory is used as input to the CAALM_CAALM annotation module for CAZyme prediction.

cazyme model download huggingface deep learning

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Summary

Get started

Add the following snippet to your workflow script to include this module.

include { CAALM_DOWNLOADMODELS } from 'nf-core/caalm/downloadmodels'

License

MIT License

Process

`Name`	`CAALM_DOWNLOADMODELS`

Output 3 channels

#1 models tuple

`models/level0` directory	Directory containing the Level 0 (binary CAZyme detection) model files downloaded from HuggingFace Hub (lczong/CAALM). `models/level0`
`models/level1` directory	Directory containing the Level 1 (CAZy class assignment) model files downloaded from HuggingFace Hub (lczong/CAALM). `models/level1`
`models/level2` directory	Directory containing the Level 2 (CAZy family assignment) model files downloaded from HuggingFace Hub (lczong/CAALM), including the FAISS index, reference database, and model weights. `models/level2`

#2 versions_python tuple

`${task.process}` string	The name of the process
`python` string	The name of the tool
`python --version \| sed 's/Python //'` eval	The expression to obtain the version of the tool

#3 versions_huggingface_hub tuple

`${task.process}` string	The name of the process
`huggingface_hub` string	The name of the tool
`python -c 'import huggingface_hub; print(huggingface_hub.__version__)'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
huggingface_hub	huggingface_hub is a Python library for interacting with the Hugging Face Hub, providing utilities for downloading and uploading models, datasets, and spaces.	https://github.com/huggingface/huggingface_hub

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:29:02 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fcaalm%2Fdownloadmodels/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/caalm/downloadmodels/blobs/sha256:3b1f5e89a004fcfdbb8eb5f15e821c5149d8c666fa00cbf37384dcdd284c2255
Size	2.4 KB
Checksum	sha256:3b1f5e89a004fcfdbb8eb5f15e821c5149d8c666fa00cbf37384dcdd284c2255
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:29:02 (UTC)		1	2.4 KB	-