nf-core/bwamem2/index @ 0.0.0-0c7146d
Summary
Create BWA-mem2 index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BWAMEM2_INDEX } from 'nf-core/bwamem2/index'
License
MIT License
Process
Name
|
BWAMEM2_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bwamem2
string
|
BWA genome index files *.{0123,amb,ann,bwt.2bit.64,pac}
|
#2
versions_bwamem2
tuple
${task.process}
string
|
The name of the process |
|---|---|
bwamem2
string
|
BWA genome index files *.{0123,amb,ann,bwt.2bit.64,pac}
|
bwa-mem2 version | grep -o -E "[0-9]+(\.[0-9]+)+"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bwamem2 | BWA-mem2 is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | https://github.com/bwa-mem2/bwa-mem2 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:48 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbwamem2%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bwamem2/index/blobs/sha256:b93019fc0a0d184cfe32a2404b2b6f685b5466fe273d1cc577ea08a88f55d3cd |
| Size | 2.5 KB |
| Checksum | sha256:b93019fc0a0d184cfe32a2404b2b6f685b5466fe273d1cc577ea08a88f55d3cd |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:48 (UTC) | 1 | 2.5 KB | - |