nf-core/bwa/aln @ 0.0.0-0c7146d
Summary
Find SA coordinates of the input reads for bwa short-read mapping
Get started
Add the following snippet to your workflow script to include this module.
include { BWA_ALN } from 'nf-core/bwa/aln'
License
MIT License
Process
Name
|
BWA_ALN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
#2
tuple
meta2
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
index
file
|
BWA genome index files Directory containing BWA index *.{amb,ann,bwt,pac,sa}
|
Output
2 channels
#1
sai
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sai
file
|
Single or paired SA coordinate files *.sai
|
#2
versions_bwa
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bwa
string
|
The tool name |
bwa 2>&1 | sed -n "s/^Version: //p"
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bwa | BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. | http://bio-bwa.sourceforge.net/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:40 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbwa%2Faln/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bwa/aln/blobs/sha256:49bc3cc5a7ad38c2e39c1cc8de956420bdeb34df49a4f2c559dad7f110d8eeb3 |
| Size | 2.9 KB |
| Checksum | sha256:49bc3cc5a7ad38c2e39c1cc8de956420bdeb34df49a4f2c559dad7f110d8eeb3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:40 (UTC) | 1 | 2.9 KB | - |