nf-core/bowtie2/build @ 0.0.0-0c7146d
Summary
Builds bowtie index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BOWTIE2_BUILD } from 'nf-core/bowtie2/build'
License
MIT License
Process
Name
|
BOWTIE2_BUILD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Reference genome FASTA file *.{fa,fasta,fna}
|
fai
file
|
Reference genome FASTA index file *.{fai}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test', single_end:false ] |
|---|---|
bowtie2
directory
|
Bowtie2 genome index files *.bt2
|
#2
versions_bowtie2
tuple
${task.process}
string
|
The name of the process |
|---|---|
bowtie2
string
|
The name of the tool |
bowtie2 --version 2>&1 | sed -n 's/.*bowtie2-align-s version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bowtie2 | Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbowtie2%2Fbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bowtie2/build/blobs/sha256:3e8f132475ba0b95f7b0a36a9a27979a8b4f7ebab988fb812f600107b530f6de |
| Size | 2.4 KB |
| Checksum | sha256:3e8f132475ba0b95f7b0a36a9a27979a8b4f7ebab988fb812f600107b530f6de |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:25 (UTC) | 1 | 2.4 KB | - |