nf-core/blobtk/depth @ 0.0.0-e2d3f0d
Summary
Creates a bed file containing the depth of data at intervals of an aligned bam.
Get started
Add the following snippet to your workflow script to include this module.
include { BLOBTK_DEPTH } from 'nf-core/blobtk/depth'
License
MIT License
Process
Name
|
BLOBTK_DEPTH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Algined BAM file. *.bam
|
index
file
|
Algined BAM index file. *.bai|*.csi
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.regions.bed.gz
file
|
Bed file describing the depth of regions across the genome. |
#2
versions_blobtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
blobtk
string
|
The name of the tool |
blobtk --version | cut -d' ' -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blobtk | BlobTk contains a set of core functions used by BlobToolKit tools. Implemented in Rust, these functions are intended to be accessible from the command line, as python modules and will include web assembly code for use in javascript. | https://github.com/genomehubs/blobtk/ |
| Version | 0.0.0-e2d3f0d |
|---|---|
| Commit ID | e2d3f0ddf4a74a4a9031f3caea2e9deaec5a440b |
| Release Date | 28 Apr 2026 21:15:08 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fblobtk%2Fdepth/0.0.0-e2d3f0d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/blobtk/depth/blobs/sha256:b3d8413908b31cd73044f42f2cb5b21f5bb93b70cff7d4a4871bba08e537cf34 |
| Size | 2.6 KB |
| Checksum | sha256:b3d8413908b31cd73044f42f2cb5b21f5bb93b70cff7d4a4871bba08e537cf34 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e2d3f0d | 28 Apr 2026 21:15:08 (UTC) | 1 | 2.6 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:28:15 (UTC) | 1 | 2.5 KB | - |