nf-core/blast/updateblastdb @ 0.0.0-0c7146d
Summary
Downloads a BLAST database from NCBI
Get started
Add the following snippet to your workflow script to include this module.
include { BLAST_UPDATEBLASTDB } from 'nf-core/blast/updateblastdb'
License
MIT License
Process
Name
|
BLAST_UPDATEBLASTDB |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'mito', single_end:false ] |
|---|---|
name
string
|
Name of the NCBI BLAST database to be downloaded |
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'mito', single_end:false ] |
|---|---|
prefix
directory
|
Output directory containing blast database files *
|
#2
versions_updateblastdb
tuple
${task.process}
string
|
The name of the process |
|---|---|
updateblastdb
string
|
The name of the tool |
update_blastdb.pl -version 2>&1 | tail -n1 | rev | cut -f1 -d ' ' | rev
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blast | BLAST finds regions of similarity between biological sequences. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:12 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fblast%2Fupdateblastdb/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/blast/updateblastdb/blobs/sha256:c9dfde600277f6f809578ed4ba87584fff4d938a4328a1a3e3a93170a6f98bf4 |
| Size | 2.2 KB |
| Checksum | sha256:c9dfde600277f6f809578ed4ba87584fff4d938a4328a1a3e3a93170a6f98bf4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:12 (UTC) | 1 | 2.2 KB | - |