nf-core/blast/makeblastdb @ 0.0.0-0c7146d
Summary
Builds a BLAST database
Get started
Add the following snippet to your workflow script to include this module.
include { BLAST_MAKEBLASTDB } from 'nf-core/blast/makeblastdb'
License
MIT License
Process
Name
|
BLAST_MAKEBLASTDB |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input fasta file *.{fa,fasta,fa.gz,fasta.gz}
|
taxid_map
file
|
taxID mapping files are tab-delimited text files used to map custom sequence IDs to NCBI taxonomic identifiers (taxIDs) during the creation of a BLAST database *.txt
|
|---|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
Output directory containing blast database files *
|
#2
versions_makeblastdb
tuple
${task.process}
string
|
The name of the process |
|---|---|
makeblastdb
string
|
The name of the tool |
makeblastdb -version 2>&1 | sed 's/^.*makeblastdb: //; s/ .*\$//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| blast | BLAST finds regions of similarity between biological sequences. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:28:08 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fblast%2Fmakeblastdb/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/blast/makeblastdb/blobs/sha256:5e36ca5da23ddca0d70ac7e7fa97d91cfc3800a6099ac4eb72cd7004a90e64d1 |
| Size | 3.2 KB |
| Checksum | sha256:5e36ca5da23ddca0d70ac7e7fa97d91cfc3800a6099ac4eb72cd7004a90e64d1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:28:08 (UTC) | 1 | 3.2 KB | - |