Nextflow Registry | nf-core/blast/blastp@0.0.0-0c7146d

nf-core/blast/blastp @ 0.0.0-0c7146d

BLASTP (Basic Local Alignment Search Tool- Protein) compares an amino acid (protein) query sequence against a protein database

fasta blast blastp protein

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

BLASTP (Basic Local Alignment Search Tool- Protein) compares an amino acid (protein) query sequence against a protein database

Add the following snippet to your workflow script to include this module.

include { BLAST_BLASTP } from 'nf-core/blast/blastp'

MIT License

Process

`Name`	`BLAST_BLASTP`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`fasta` file	Input fasta file containing queries sequences `*.{fa,fasta,fa.gz,fasta.gz}`

#2 tuple

`meta2` map	Groovy Map containing db information e.g. [ id:'test2', single_end:false ]
`db` directory	Directory containing the blast database `*`

`out_ext` string	Specify the type of output file to be generated. `xml` corresponds to BLAST xml format. `tsv` corresponds to BLAST tabular format. `csv` corresponds to BLAST comma separated format. `xml\|tsv\|csv`

Output 4 channels

#1 csv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`.csv` file	File containing blastp hits in comma separated format `*.csv`

#2 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`.tsv` file	File containing blastp hits in tabular format `*.{tsv}`

#3 xml tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`.xml` file	File containing blastp hits in XML format `*.{xml}`

#4 versions_blastp tuple

`${task.process}` string	The name of the process
`blastp` string	The name of the tool
`blastp -version 2>&1 \| sed 's/^.blastp: //; s/ .\$//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
blast	BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.	https://blast.ncbi.nlm.nih.gov/Blast.cgi

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:28:06 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fblast%2Fblastp/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/blast/blastp/blobs/sha256:cb056d4079b24c3551b76a9c3d904467e7c091a574731ef7efe1c0817f075273
Size	3.5 KB
Checksum	sha256:cb056d4079b24c3551b76a9c3d904467e7c091a574731ef7efe1c0817f075273
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:28:06 (UTC)		1	3.5 KB	-