nf-core/bismark/genomepreparation @ 0.0.0-0c7146d
Summary
Converts a specified reference genome into two different bisulfite converted versions and indexes them for alignments.
Get started
Add the following snippet to your workflow script to include this module.
include { BISMARK_GENOMEPREPARATION } from 'nf-core/bismark/genomepreparation'
License
MIT License
Process
Name
|
BISMARK_GENOMEPREPARATION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
BismarkIndex
directory
|
Bismark genome index directory BismarkIndex
|
#2
versions_bismark
tuple
${task.process}
string
|
The name of the process |
|---|---|
bismark
string
|
The name of the tool |
bismark -v 2>&1 | sed -n 's/^.*Bismark Version: v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bismark | Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion. | https://github.com/FelixKrueger/Bismark |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:27:26 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbismark%2Fgenomepreparation/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bismark/genomepreparation/blobs/sha256:4308fa9632ed7000aa95540d30fa4ca65297944d9ca751cf4b72204f22aa4a8d |
| Size | 2.9 KB |
| Checksum | sha256:4308fa9632ed7000aa95540d30fa4ca65297944d9ca751cf4b72204f22aa4a8d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:27:26 (UTC) | 1 | 2.9 KB | - |