Nextflow Registry | nf-core/biscuit/mergecg@0.0.0-0c7146d

nf-core/biscuit/mergecg @ 0.0.0-0c7146d

Merges methylation information for opposite-strand C's in a CpG context

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @njspix

Maintainers: @njspix @sateeshperi

Merges methylation information for opposite-strand C's in a CpG context

Add the following snippet to your workflow script to include this module.

include { BISCUIT_MERGECG } from 'nf-core/biscuit/mergecg'

MIT License

Process

`Name`	`BISCUIT_MERGECG`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bed` file	Biscuit BED file (output of biscuit vcf2bed)

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Input genome fasta file

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`index` directory	Directory containing biscuit genome index

Output 3 channels

#1 bed tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bed.gz` file	Gzipped BED file with merged methylation information `*.bed.gz`

#2 versions_biscuit tuple

`${task.process}` string	The name of the process
`biscuit` string	The name of the tool
`biscuit version \|& sed '1!d; s/^.*BISCUIT Version: //'` eval	The expression to obtain the version of the tool

#3 versions_samtools tuple

`${task.process}` string	The name of the process
`samtools` string	The name of the tool
`samtools --version \|& sed '1!d; s/^.*samtools //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
biscuit	A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data	https://huishenlab.github.io/biscuit/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:27:12 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbiscuit%2Fmergecg/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/biscuit/mergecg/blobs/sha256:8965bd977bf5915619b314ae6d9b34891096fd3543800fc637b82fffe03ac523
Size	2.7 KB
Checksum	sha256:8965bd977bf5915619b314ae6d9b34891096fd3543800fc637b82fffe03ac523
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:27:12 (UTC)		1	2.7 KB	-