Nextflow Registry | nf-core/biscuit/align@0.0.0-0c7146d

nf-core/biscuit/align @ 0.0.0-0c7146d

Aligns single- or paired-end reads from bisulfite-converted libraries to a reference genome using Biscuit.

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @njspix

Maintainers: @njspix @sateeshperi

Aligns single- or paired-end reads from bisulfite-converted libraries to a reference genome using Biscuit.

Add the following snippet to your workflow script to include this module.

include { BISCUIT_ALIGN } from 'nf-core/biscuit/align'

MIT License

Process

`Name`	`BISCUIT_ALIGN`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`reads` file	List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Input genome fasta file

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`index` directory	Directory containing biscuit genome index

Output 4 channels

#1 bai tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bai` file	Output BAM index `*.{bai}`

#2 bam tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bam` file	Output BAM file containing read alignments `*.{bam}`

#3 versions_biscuit tuple

`${task.process}` string	The name of the process
`biscuit` string	The name of the tool
`biscuit version \|& sed '1!d; s/^.*BISCUIT Version: //'` eval	The expression to obtain the version of the tool

#4 versions_samtools tuple

`${task.process}` string	The name of the process
`samtools` string	The name of the tool
`samtools --version \|& sed '1!d; s/^.*samtools //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
biscuit	A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data	https://huishenlab.github.io/biscuit/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:27:02 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbiscuit%2Falign/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/biscuit/align/blobs/sha256:5766a8158fa74b6a6ae05b16cf046ee76bf9488cb9a5eb22a536b1e6f71d2dea
Size	3.1 KB
Checksum	sha256:5766a8158fa74b6a6ae05b16cf046ee76bf9488cb9a5eb22a536b1e6f71d2dea
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:27:02 (UTC)		1	3.1 KB	-