Nextflow Registry | nf-core/bedtools/jaccard@0.0.0-0c7146d

nf-core/bedtools/jaccard @ 0.0.0-0c7146d

Calculate Jaccard statistic b/w two feature files.

vcf gff bed jaccard intersection union statistics

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

Calculate Jaccard statistic b/w two feature files.

Add the following snippet to your workflow script to include this module.

include { BEDTOOLS_JACCARD } from 'nf-core/bedtools/jaccard'

MIT License

Process

`Name`	`BEDTOOLS_JACCARD`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input_a` file	VCF,GFF or BED file to use with the `-a` option `*.{vcf,vcf.gz,bed,bed.gz,gff}`
`input_b` file	VCF,GFF or BED file to use with the `-b` option `*.{vcf,vcf.gz,bed,bed.gz,gff}`

#2 tuple

`meta2` map	Groovy Map containing genome file information e.g. [ id:'test', single_end:false ]
`genome_file` file	A file containing all the contigs of the genome used to create the input files `*.{txt,sizes,fai}`

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	TSV file containing the results `*.tsv`

#2 versions_bedtools tuple

`${task.process}` string	The name of the process
`bedtools` string	The name of the tool
`bedtools --version \| sed -e 's/bedtools v//g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
bedtools	A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:26:18 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbedtools%2Fjaccard/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bedtools/jaccard/blobs/sha256:6ea8dbe985af08f713bb7386db7ed0871b791d53c8c65aea0fe7787074107ee4
Size	2.5 KB
Checksum	sha256:6ea8dbe985af08f713bb7386db7ed0871b791d53c8c65aea0fe7787074107ee4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:26:18 (UTC)		1	2.5 KB	-