nf-core/bedops/gtf2bed @ 0.0.0-0c7146d
Summary
Convert gtf format to bed format
Get started
Add the following snippet to your workflow script to include this module.
include { BEDOPS_GTF2BED } from 'nf-core/bedops/gtf2bed'
License
MIT License
Process
Name
|
BEDOPS_GTF2BED |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gtf
file
|
A reference file in GTF format *.{gtf,gtf.gz}
|
Output
2 channels
#1
bed
tuple
meta
file
|
A reference file in BED format *.{bed}
|
|---|---|
*.bed
file
|
A reference file in BED format *.{bed}
|
#2
versions_bedops
tuple
${task.process}
string
|
The name of the process |
|---|---|
bedops
string
|
The name of the tool |
bedops --version | sed -n "s/.*version: *\([^ ]*\).*/\1/p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gtf2bed | The gtf2bed script converts 1-based, closed [start, end] Gene Transfer Format v2.2 (GTF2.2) to sorted, 0-based, half-open [start-1, end) extended BED-formatted data. | https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/gtf2bed.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:26:01 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbedops%2Fgtf2bed/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bedops/gtf2bed/blobs/sha256:8a0137ca2822783b67e9d5480dde3a0f2e5675e47a78cebad5efc068d540d65b |
| Size | 2.2 KB |
| Checksum | sha256:8a0137ca2822783b67e9d5480dde3a0f2e5675e47a78cebad5efc068d540d65b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:26:01 (UTC) | 1 | 2.2 KB | - |