Nextflow Registry | nf-core/bcftools/rohviz@0.0.0-0c7146d

nf-core/bcftools/rohviz @ 0.0.0-0c7146d

Visualise the output of bcftools roh

visualisation RoH VCF

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @yz533cb

Visualise the output of bcftools roh

Add the following snippet to your workflow script to include this module.

include { BCFTOOLS_ROHVIZ } from 'nf-core/bcftools/rohviz'

MIT License

Process

`Name`	`BCFTOOLS_ROHVIZ`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`roh` file	Output of BCFtools_roh. Contains site-specific and/or per-region runs of homo/autozygosity calls. `*.roh`

#2 tuple

`meta1` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`vcf` file	VCF file `*.{vcf,.vcf.gz}`

`regions_list` file	Regions can be specified either on command line or in a VCF, BED, or tab-delimited file (the default).

`samples_file` file	File of sample names to include or exclude if prefixed with '^'.

Output 3 channels

#1 html tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'sample1' ]
`*.html` file	RoH visual report file. `*.html`

#2 versions_less tuple

`${task.process}` string	The process the versions were collected from
`less` string	The tool name
`less --version \| head -n1 \| sed 's/less //'` eval	The expression to obtain the version of the tool

#3 versions_bcftools tuple

`${task.process}` string	The process the versions were collected from
`bcftools` string	The tool name
`bcftools --version \| sed '1!d; s/^.*bcftools //'` eval	The command used to generate the version of the tool

Tool	Description	Homepage
roh-viz	"Visualise the output of bcftools roh. It creates an HTML/JavaScript document which can be interactively viewed in a web browser."	http://samtools.github.io/bcftools/bcftools.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:25:42 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Frohviz/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bcftools/rohviz/blobs/sha256:11e741bfacc6d847ce615f6cc215a07068c04b2864bd9ec7755c9b70b11520f4
Size	2.9 KB
Checksum	sha256:11e741bfacc6d847ce615f6cc215a07068c04b2864bd9ec7755c9b70b11520f4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:25:42 (UTC)		1	2.9 KB	-