nf-core/bcftools/reheader @ 0.0.0-0c7146d
Summary
Reheader a VCF file
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_REHEADER } from 'nf-core/bcftools/reheader'
License
MIT License
Process
Name
|
BCFTOOLS_REHEADER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF/BCF file *.{vcf.gz,vcf,bcf}
|
header
file
|
New header to add to the VCF *.{header.txt}
|
samples
file
|
File containing sample names to update (one sample per line) *.{samples.txt}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fai
file
|
Fasta index to update header sequences with *.{fai}
|
Output
3 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{vcf,vcf.gz,bcf,bcf.gz}
file
|
VCF with updated header, bgzipped per default *.{vcf,vcf.gz,bcf,bcf.gz}
|
#2
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{csi,tbi}
file
|
Index of VCF with updated header *.{csi,tbi}
|
#3
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| reheader | Modify header of VCF/BCF files, change sample names. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:25:38 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Freheader/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bcftools/reheader/blobs/sha256:e937109ba676c9816628ab5d52296adefc4204d638755dc0ab9df8bfd3d85814 |
| Size | 4.2 KB |
| Checksum | sha256:e937109ba676c9816628ab5d52296adefc4204d638755dc0ab9df8bfd3d85814 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:25:38 (UTC) | 1 | 4.2 KB | - |