nf-core/bcftools/index @ 0.0.0-0c7146d
Summary
Index VCF tools
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_INDEX } from 'nf-core/bcftools/index'
License
MIT License
Process
Name
|
BCFTOOLS_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF file (optionally GZIPPED) *.{vcf,vcf.gz}
|
Output
3 channels
#1
csi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csi
file
|
Default VCF file index file *.csi
|
#2
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tbi
file
|
Alternative VCF file index file for larger files (activated with -t parameter) *.tbi
|
#3
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bcftools | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | https://samtools.github.io/bcftools/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:25:11 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bcftools/index/blobs/sha256:6e03584c0942381d659b63fb87921fca5d766d070f0844f9536f529721a7fce3 |
| Size | 2.9 KB |
| Checksum | sha256:6e03584c0942381d659b63fb87921fca5d766d070f0844f9536f529721a7fce3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:25:11 (UTC) | 1 | 2.9 KB | - |