nf-core/bcftools/consensus @ 0.0.0-0c7146d
Summary
Compresses VCF files
Get started
Add the following snippet to your workflow script to include this module.
include { BCFTOOLS_CONSENSUS } from 'nf-core/bcftools/consensus'
License
MIT License
Process
Name
|
BCFTOOLS_CONSENSUS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF file *.{vcf}
|
tbi
file
|
tabix index file *.{tbi}
|
fasta
file
|
FASTA reference file *.{fasta,fa}
|
mask
file
|
BED file used for masking *.{bed}
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa
file
|
FASTA reference consensus file *.{fasta,fa}
|
#2
versions_bcftools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
bcftools
string
|
The tool name |
bcftools --version | sed '1!d; s/^.*bcftools //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| consensus | Create consensus sequence by applying VCF variants to a reference fasta file. | http://samtools.github.io/bcftools/bcftools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:25:03 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbcftools%2Fconsensus/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bcftools/consensus/blobs/sha256:40ae10fe28b2e277f0bb2ab2dee911d8faf56fe6c16ca10624300a8b49922ee7 |
| Size | 2.5 KB |
| Checksum | sha256:40ae10fe28b2e277f0bb2ab2dee911d8faf56fe6c16ca10624300a8b49922ee7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:25:03 (UTC) | 1 | 2.5 KB | - |