nf-core/bbmap/sendsketch @ 0.0.0-0c7146d
Summary
Compares query sketches to reference sketches hosted on a remote server via the Internet.
Get started
Add the following snippet to your workflow script to include this module.
include { BBMAP_SENDSKETCH } from 'nf-core/bbmap/sendsketch'
License
MIT License
Process
Name
|
BBMAP_SENDSKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
file
file
|
file with nucleotide sequences *.{fna, fa, fasta, fa.gz, fasta.gz, fna.gz, fastq.gz, fastq, fq.gz, fq}
|
Output
2 channels
#1
hits
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
.txt file containing hits from a query seuqnce to various reference sequences output *.{txt}
|
#2
versions_bbmap
tuple
${task.process}
string
|
The name of the process |
|---|---|
bbmap
string
|
The name of the tool |
bbversion.sh | grep -v "Duplicate cpuset"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bbmap | BBMap is a short read aligner, as well as various other bioinformatic tools. | https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:24:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbbmap%2Fsendsketch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bbmap/sendsketch/blobs/sha256:fd3569b7678efd9823579354fc8aeaf10e9915ce737ca76d21893024000bbcdc |
| Size | 2.6 KB |
| Checksum | sha256:fd3569b7678efd9823579354fc8aeaf10e9915ce737ca76d21893024000bbcdc |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:24:56 (UTC) | 1 | 2.6 KB | - |