nf-core/bbmap/clumpify @ 0.0.0-0c7146d
Summary
Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates
Get started
Add the following snippet to your workflow script to include this module.
include { BBMAP_CLUMPIFY } from 'nf-core/bbmap/clumpify'
License
MIT License
Process
Name
|
BBMAP_CLUMPIFY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Clumpify log file *clumpify.log
|
#2
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
The reordered/clumped (and if necessary deduped) fastq reads *.clumped.fastq.gz
|
#3
versions_bbmap
tuple
${task.process}
string
|
The name of the process |
|---|---|
bbmap
string
|
The name of the tool |
bbversion.sh | grep -v "Duplicate cpuset"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bbmap | BBMap is a short read aligner, as well as various other bioinformatic tools. | https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/clumpify-guide/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:24:46 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbbmap%2Fclumpify/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bbmap/clumpify/blobs/sha256:d4dfb9bb627d1b2015d73e06155ace93262e48dfd0ab3f3cb8339c408a302dda |
| Size | 2.6 KB |
| Checksum | sha256:d4dfb9bb627d1b2015d73e06155ace93262e48dfd0ab3f3cb8339c408a302dda |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:24:46 (UTC) | 1 | 2.6 KB | - |