nf-core/bamtools/stats @ 0.0.0-0c7146d
Summary
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { BAMTOOLS_STATS } from 'nf-core/bamtools/stats'
License
MIT License
Process
Name
|
BAMTOOLS_STATS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.bam
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.stats
file
|
File containing alignment statistics *.stats
|
#2
versions_bamtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamtools
string
|
The name of the tool |
bamtools --version | sed '2!d;s/bamtools //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamtools | C++ API & command-line toolkit for working with BAM data | http://github.com/pezmaster31/bamtools |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:24:23 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbamtools%2Fstats/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bamtools/stats/blobs/sha256:b8ddf894f18502ce8d47f861c963409e473c7c0379bb3a6ecb8c76f673a77834 |
| Size | 2.1 KB |
| Checksum | sha256:b8ddf894f18502ce8d47f861c963409e473c7c0379bb3a6ecb8c76f673a77834 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:24:23 (UTC) | 1 | 2.1 KB | - |