nf-core/bamtofastq10x @ 0.0.0-0c7146d
Summary
Tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA, and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis
Get started
Add the following snippet to your workflow script to include this module.
include { BAMTOFASTQ10X } from 'nf-core/bamtofastq10x'
License
MIT License
Process
Name
|
BAMTOFASTQ10X |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
BAM file *.bam
|
Output
2 channels
#1
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
**/*.fastq.gz
file
|
fastq compressed file **/*.fastq.gz
|
#2
versions_bamtofastq10x
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamtofastq10x
string
|
The name of the tool |
bamtofastq --version |& sed "1!d ; s/bamtofastq //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamtofastq10x | Tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA, and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis | https://github.com/10XGenomics/bamtofastq |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:23:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbamtofastq10x/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bamtofastq10x/blobs/sha256:3ee1e8a4973baa8abdaa989c80d69003b073bc10043fc025647d5bb17b250d95 |
| Size | 2.2 KB |
| Checksum | sha256:3ee1e8a4973baa8abdaa989c80d69003b073bc10043fc025647d5bb17b250d95 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:23:47 (UTC) | 1 | 2.2 KB | - |