nf-core/bamaligncleaner @ 0.0.0-0c7146d
Summary
removes unused references from header of sorted BAM/CRAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { BAMALIGNCLEANER } from 'nf-core/bamaligncleaner'
License
MIT License
Process
Name
|
BAMALIGNCLEANER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Sorted BAM/CRAM file *.{bam,cram}
|
#2
versions_bamaligncleaner
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamaligncleaner
string
|
The name of the tool |
bamAlignCleaner --version | sed 's/.*version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamaligncleaner | Removes unaligned references in aligned BAM alignment file | https://github.com/maxibor/bamAlignCleaner |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:23:38 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbamaligncleaner/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bamaligncleaner/blobs/sha256:5a26fd28d496033b4e730b31e25d99c7af85e5f86a0eb825b34c65285bc2fc1d |
| Size | 2.2 KB |
| Checksum | sha256:5a26fd28d496033b4e730b31e25d99c7af85e5f86a0eb825b34c65285bc2fc1d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:23:38 (UTC) | 1 | 2.2 KB | - |